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Oligo Synthesis

Oligo Synthesis : CEPs

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Pyrrolo-dC-CE Phosphoramidite

Pyrrolo-dC-CE Phosphoramidite

Glen Research

Catalogue No.DescriptionPack SizePriceQty
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10-1017-02Pyrrolo-dC-CE Phosphoramidite 0.25g €807.60 Quantity Add to Order
10-1017-90Pyrrolo-dC-CE Phosphoramidite 100µmoles €250.80 Quantity Add to Order
10-1017-95Pyrrolo-dC-CE Phosphoramidite 50µmoles €141.60 Quantity Add to Order

Description

Pyrrolo-dC-CE Phosphoramidite

Structure

Catalog Number: 10-1017-xx

Description: Pyrrolo-dC-CE Phosphoramidite

5'-Dimethoxytrityl-[6-methyl-pyrrolo-[2,3-d]-pyrimidine-2(3H)-one]-
2'-deoxyribonucleoside, 3'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite
Formula: C42H50N5O7P M.W.: 767.85 F.W.: 327.23

Diluent: Anhydrous Acetonitrile
Coupling: Standard coupling time. Use 0.02 M Iodine for Oxidation.
Deprotection: Ammonium Hydroxide for 24 hours at room temperature.
Storage: Refrigerated storage, maximum of 2-8°C, dry
Stability in Solution: 2-3 days
Please Note: This product is covered by US Patent No.: 7,144,995. Patented under European patent number 1483280.

FLUORESCENT NUCLEOSIDES

Etheno-dA is a fluorescent nucleoside which is especially useful in observing the transition between DNA structural types. It is quite base labile and should be deprotected with ammonium hydroxide at room temperature for 24 hours. Alternatively, UltraMild chemistry can be used. 2-Aminopurine and AP-dC (G-Clamp) are also useful fluorescent nucleosides.

Pyrrolo-dC is a fluorescent deoxycytidine analog that is an ideal probe of DNA structure and dynamics. It base-pairs as a normal dC nucleotide. An oligo fully substituted with pyrrolo-dC has the same ™ as the control dC oligo with the same specificity for dG. Its small size does not perturb the structure of the DNA helix and it is well tolerated by a number of DNA and RNA polymerases. It is highly fluorescent and its excitation and emission are well to the red of most fluorescent nucleotide analogs, which eliminates or reduces background fluorescence from proteins. Pyrrolo-dCTP has potential uses in biological assay development.

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Protocols

Applications & Benefits

EXTINCTION DATA

Item Nucleoside λMax-1 Emax-1 λMax-2 Emax-2 E260


(nm) (ml/µmole) nm (ml/µmole) (ml/µmole)
10-1017 Pyrrolo-dC 339 2.36 229 17.5 2.41


DILUTION/COUPLING DATA

The table below shows pack size data and, for solutions, dilutions and approximate couplings based on normal priming procedures. Please link for more detailed usage information with the various synthesizers.

ABI 392/394
Cat.No. Pack
Size
Grams/
Pack
0.1M Dil.
(mL)
LV40 LV200 40nm 0.2µm 1µm 10µm
Approximate Number of Additions
10-1017-02 0.25grams .25grams 3.26 95.33 57.2 35.75 26 19.07 4.77
10-1017-90 100µmoles .077grams 1 20 12 7.5 5.45 4 1
10-1017-95 50µmoles .038grams .5 3.33 2 1.25 .91 .67 .17
Expedite
Cat.No. Pack
Size
Grams/
Pack
Dilution
(mL)
Molarity 50nm 0.2µm 1µm 15µm
Approximate Number of Additions
10-1017-02 0.25grams .25grams 4.86 .07 90.8 56.75 41.27 5.68
10-1017-90 100µmoles .077grams 1.5 .07 23.6 14.75 10.73 1.48
10-1017-95 50µmoles .038grams .75 .07 8.6 5.38 3.91 .54
Beckman
Cat.No. Pack
Size
Grams/
Pack
Dilution
(mL)
Molarity 30nm 200nm 1000nm

Approximate Number of Additions
10-1017-02 0.25grams .25grams 4.86 .07 92.4 57.75 42

10-1017-90 100µmoles .077grams 1.5 .07 25.2 15.75 11.45

10-1017-95 50µmoles .038grams .75 .07 10.2 6.38 4.64

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Related products

If you cannot find the answer to your problem then please contact us or telephone +44 (0)1954 210 200