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Oligo Synthesis

Oligo Synthesis : CEPs

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N3-Methyl-C-CE Phosphoramidite

5'-Dimethoxytrityl-N4-acetyl-N3-methyl-Cytidine,2'-O-TBDMS-3'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite

Glen Research

Catalogue No.DescriptionPack SizePriceQty
10-3013-02N3-Methyl-C-CE Phosphoramidite0.25g £586.00 Quantity Add to Order
10-3013-90N3-Methyl-C-CE Phosphoramidite100µmoles £218.00 Quantity Add to Order
10-3013-95N3-Methyl-C-CE Phosphoramidite50µmoles £118.00 Quantity Add to Order

Description

N3-Methyl-C (m3C) is a naturally occurring ribonucleoside that is mostly found in tRNA. Under physiological conditions, m3C is positively charged. Since the methylation is on the base pairing face, duplexes containing m3C have melting temperatures that are significantly disrupted.

 

 

Usage

  • Coupling: Coupling: 15 minute coupling time recommended
  • Deprotection: Deprotection: RNA Deprotection-see bulletin
    Note: This product is not compatible with methylamine deprotection reagents such as AMA, EMAM, and methylamine gas.

Dilution/Coupling Data

The table below show pack size data and, for solutions, dilution and approximate coupling based on normal priming procedures.

ABI 392/394

Catalog # Pack Size Grams/Pack 0.1M Dil. (mL) Approximate Number of Additions

LV40 LV200 40nm 0.2μm 1μm 10μm
10-3013-95 50 µmol 0.46 0.5 3.3 2 1.2 0.9 0.6 0.1
10-3013-90 100 µmol 0.92 1 20 12 7.5 5.4 4 1
10-3013-02 0.25 g 0.25 2.73 77.6 46.6 29.1 21.1 15.5 3.8

 

Expedite

Catalog # Pack Size Grams/Pack Dilution (mL) Approximate Number of Additions

Molarity 50nm 0.2μm 1μm 15μm
10-3013-95 50 µmol 0.46 0.75 0.07 8.6 5.3 1.7 0.5
10-3013-90 100 µmol 0.92 1.5 0.07 23.6 14.7 4.9 1.4
10-3013-02 0.5 g 0.25 4.07 0.07 75 46.8 15.6 4.6

If you cannot find the answer to your problem then please contact us or telephone +44 (0)1954 210 200

References

SDS and CoA can be found on supplier's website here

References

  • K.E. Bohnsack, N. Kleiber, N. Lemus-Diaz, and M.T. Bohnsack, Trends Biochem Sci, 2022, 47, 596-608.
  • S. Mao, et al., ACS Chem Biol, 2021, 16, 76-85.
  • S. Moreno, L. Flemmich, and R. Micura, Monatsh Chem, 2022, 153, 285-291.

If you cannot find the answer to your problem then please contact us or telephone +44 (0)1954 210 200

Notes

Product Specifications

Formula: C48H66N5O9PSi

M.W.: 916.14

F.W.: 319.21

CAS Number: 2931457-60-0

Specifications

Diluent Anhydrous Acetonitrile/Dichloromethane 1:1 (v/v)

Recommended Storage Freezer storage, -10 to -30°C, dry

Stability In Solution 1-2 Days

If you cannot find the answer to your problem then please contact us or telephone +44 (0)1954 210 200