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Oligo Synthesis

Oligo Synthesis : CEPs

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8-Amino-dG-CE Phosphoramidite

8-Amino-dG-CE Phosphoramidite

Glen Research

Catalogue No.DescriptionPack SizePriceQty
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10-1079-028-Amino-dG-CE Phosphoramidite 0.25g €1,216.80 Quantity Add to Order
10-1079-908-Amino-dG-CE Phosphoramidite 100µmoles €436.80 Quantity Add to Order
10-1079-958-Amino-dG-CE Phosphoramidite 50µmoles €234.00 Quantity Add to Order

Description

8-Amino-dG-CE Phosphoramidite

Structure

Catalog Number: 10-1079-xx

Description: 8-Amino-dG-CE Phosphoramidite

5'-Dimethoxytrityl-N2,N8-bis(dimethylaminomethylidine)-8-amino-2'-deoxyGuanosine,
3'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite
Formula: C46H59N10O7P M.W.: 895.01 F.W.: 344.22

Diluent: Anhydrous Acetonitrile
Coupling: No changes needed from standard method recommended by synthesizer manufacturer.
Deprotection: Cleave and deprotect with ammonium hydroxide containing 0.1M 2-mercaptoethanol, (7µl/ml) at 55° for 20 hours.
Storage: Refrigerated storage, maximum of 2-8°C, dry
Stability in Solution: 2-3 days

8-Amino-dA and 8-amino-dG are useful in triplex formation due to the presence of the additional amino groups.

2’-DeoxyXanthosine (dX) is a naturally occurring nucleoside that may be derived from oxidative deamination of 2’-deoxyGuanosine (dG). dX has a similar bonding pattern to thymidine and it may base pair with dA, with such purine-purine interactions causing duplex distortion. dX also featured in attempts to extend the genetic alphabet with a new base pair of dX and pyrimidine-2,4-diamine nucleoside. dX has also interested researchers in the field of DNA damage and repair since it is a product of nitric oxide-induced mutagenesis.

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Protocols

MSDS

Glen Report 16.1: Minor Base and Related Novel Phosphoramidites

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Notes

Synthetic oligonucleotides containing 8-amino-dG must be cleaved and deprotected with ammonium hydroxide containing 0.25M 2-mercaptoethanol to avoid oxidative degradation of 8-amino-dG sites.

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Applications & Benefits

Phosphoramidites

DILUTION/COUPLING DATA

The table below shows pack size data and, for solutions, dilutions and approximate couplings based on normal priming procedures. Please link for more detailed usage information with the various synthesizers.

ABI 392/394
Cat.No. Pack
Size
Grams/
Pack
0.1M Dil.
(mL)
LV40 LV200 40nm 0.2µm 1µm 10µm
Approximate Number of Additions
10-1079-02 0.25grams .25grams 2.79 79.67 47.8 29.88 21.73 15.93 3.98
10-1079-90 100µmoles .09grams 1 20 12 7.5 5.45 4 1
10-1079-95 50µmoles .045grams .5 3.33 2 1.25 .91 .67 .17
Expedite
Cat.No. Pack
Size
Grams/
Pack
Dilution
(mL)
Molarity 50nm 0.2µm 1µm 15µm
Approximate Number of Additions
10-1079-02 0.25grams .25grams 4.17 .07 77 48.13 35 4.81
10-1079-90 100µmoles .09grams 1.5 .07 23.6 14.75 10.73 1.48
10-1079-95 50µmoles .045grams .75 .07 8.6 5.38 3.91 .54
Beckman
Cat.No. Pack
Size
Grams/
Pack
Dilution
(mL)
Molarity 30nm 200nm 1000nm

Approximate Number of Additions

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Related products

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