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Enzymes for Molecular Biology

Enzymes for Molecular Biology: Enzymes for Molecular Biology

RNA 5' Polyphosphatase

RNA 5' Polyphosphatase is used for the Conversion of 5´-triphosphorylated RNA to 5´-monophosphorylated RNA for use in 5´-RNA ligation-tagging methods using T4 RNA Ligase, analysis of 5´-end structure of RNA and preparation of substrate RNA molecules for subsequent degradation using EPICENTRE's Terminator™ 5´-Phosphate-Dependent Exonuclease.

BioSearch Tech (Lucigen/Epicentre)

Catalogue No.DescriptionPack SizePriceQty
RP8092H RNA 5' Polyphosphatase20 U/µl £150.00 Quantity Add to Order

Description

RNA 5' Polyphosphatase* is a Mg2 -independent phosphohydrolase discovered and characterized by EPICENTRE scientists. The enzyme sequentially removes the γ and β phosphates from 5´-triphosphorylated RNA (such as primary RNA transcripts):
5´ pppN—OH 3' → 5' pN—OH 3´ 2 Pi 

RNAs with a 5´-diphosphorylated end are also converted to 5'-monophosphorylated RNA by RNA 5' Polyphosphatase:
5' ppN—OH 3' → 5' pN—OH 3' Pi 

RNA Polyphosphatase has no activity on RNA with a 5' cap (e.g., 5' m7GpppN—OH 3'), or a 5'-monophosphorylated end (5' pN—OH 3'). However, both NTPs and dNTPs are substrates for the enzyme, yielding the corresponding NMPs and dNMPs inorganic phosphate: (d)NTP → (d)NMP 2Pi 

Unit Definition

One unit of RNA 5' Polyphosphatase releases 1 nmol of inorganic phosphate from ATP in 1 hour at 37°C under standard assay conditions. 

Storage Buffer

50% glycerol containing 0.05 M Tris-HCl (pH 7.5), 0.1 mM EDTA, 1 mM DTT, 0.1 M NaCl, and 0.1% Triton® X-100. 

10X Reaction Buffer

0.5 M HEPES-KOH (pH 7.5), 1 M NaCl, 10 mM EDTA, 1% β-mercaptoethanol, and 0.1% Triton® X-100. 

Inactivation/Inhibitors

RNA 5' Polyphosphatase is inhibited ~50% by 100 mM of inorganic phosphate (Pi) using ATP as a substrate. 

Quality Control

RNA 5' Polyphosphatase is free of detectable DNA exo- and endonuclease, and RNase activities.

 *Covered by issued and/or pending patents.

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Protocols

Protocols

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References

Citations for RNA 5´ Polyphosphatase

  1. Fujimura, T. & Esteban, R. (2010) Yeast Double-stranded RNA Virus L-A Deliberately Synthesizes RNA Transcripts with 5'-Diphosphate, J. Biol. Chem. 285 , 22911-22918.

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Notes

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Applications & Benefits

Applications

    • Conversion of 5'-triphosphorylated RNA to 5'-monophosphorylated RNA for use in 5'-RNA ligation-tagging methods using T4 RNA Ligase.
    • Analysis of 5'-end structure of RNA.
    • Preparation of substrate RNA molecules for subsequent degradation using EPICENTRE's Terminator™ 5'-Phosphate-Dependent Exonuclease.

 

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