Catalog Number: 10-3040-xx
Description: I-CE Phosphoramidite
5'-Dimethoxytrityl-Inosine, 2'-O-TBDMS-3'-[(2-cyanoethyl)- (N,N-diisopropyl)]-phosphoramidite |
Formula: C46H61N6O8PSi |
M.W.: 885.08 |
F.W.: 330.19 |
Diluent: Anhydrous Acetonitrile |
Coupling: 12 minute coupling time recommended. |
Deprotection: RNA deprotection- seeTechnical Bulletin |
Storage: Freezer storage, -10 to -30°C, dry |
Stability in Solution: 2-3 days |
MINOR RNA PHOSPHORAMIDITES (TBDMS PROTECTED)
Inosine and 5-Methyl-Uridine are useful for analyzing RNA structure and activity relationships. 5-Bromo-Uridine and 5-Iodo-Uridine have been used for crystallography studies and cross-linking experiments. 6-Thioguanosine (6-thio-G) has applications in ribozyme and siRNA research, as well as in RNA-protein interactions. The removal of the silyl protecting group without interfering with the sulfur is critical. This is removed1 cleanly by triethylamine trihydrofluoride in DMSO but t-butylammonium fluoride (TBAF) leads to degradation of the thio-nucleotide analogue and should not be used. 2-Aminopurine riboside is useful for analyzing RNA structure and activity relationships, for example, in ribozyme studies.
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